Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10/ -D /mnt/storage/home/aselsukova/juicer -d /mnt/storage/home/aselsukova/juicer/scratch/mastocytes/VL_A5 -s DpnII -p /mnt/storage/home/aselsukova/juicer/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/juicer/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/juicer/scratch/juicer_scratch/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  489,255
 Normal Paired: 278,183 (56.86%)
 Chimeric Paired: 162,394 (33.19%)
 Chimeric Ambiguous: 30,880 (6.31%)
 Unmapped: 17,798 (3.64%)
 Ligation Motif Present: 165,868 (33.90%)
Alignable (Normal+Chimeric Paired): 440,577 (90.05%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/juicer/scratch/mastocytes/VL_A5/aligned inter.txt
Intra-fragment Reads: 91,668 (18.74% / 26.09%)
Below MAPQ Threshold: 53,078 (10.85% / 15.11%)
Hi-C Contacts: 206,575 (42.22% / 58.80%)
 Ligation Motif Present: 95,760  (19.57% / 27.26%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 82,557  (16.87% / 23.50%)
Intra-chromosomal: 124,018  (25.35% / 35.30%)
Short Range (<20Kb): 76,720  (15.68% / 21.84%)
Long Range (>20Kb): 47,298  (9.67% / 13.46%)