Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/ckit/51 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/ckit/51 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  324,469
 Normal Paired: 190,464 (58.70%)
 Chimeric Paired: 88,818 (27.37%)
 Chimeric Ambiguous: 43,935 (13.54%)
 Unmapped: 1,252 (0.39%)
 Ligation Motif Present: 259,864 (80.09%)
Alignable (Normal+Chimeric Paired): 279,282 (86.07%)
Unique Reads: 278,536 (85.84%)
PCR Duplicates: 615 (0.19%)
Optical Duplicates: 131 (0.04%)
Library Complexity Estimate: 63,260,802
Intra-fragment Reads: 15,460 (4.76% / 5.55%)
Below MAPQ Threshold: 33,072 (10.19% / 11.87%)
Hi-C Contacts: 230,004 (70.89% / 82.58%)
 Ligation Motif Present: 157,822  (48.64% / 56.66%)
 3' Bias (Long Range): 72% - 28%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 46,828  (14.43% / 16.81%)
Intra-chromosomal: 183,176  (56.45% / 65.76%)
Short Range (<20Kb): 132,220  (40.75% / 47.47%)
Long Range (>20Kb): 50,956  (15.70% / 18.29%)