Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/ckit/52 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/ckit/52 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  317,031
 Normal Paired: 183,850 (57.99%)
 Chimeric Paired: 90,649 (28.59%)
 Chimeric Ambiguous: 41,325 (13.04%)
 Unmapped: 1,207 (0.38%)
 Ligation Motif Present: 243,559 (76.82%)
Alignable (Normal+Chimeric Paired): 274,499 (86.58%)
Unique Reads: 273,729 (86.34%)
PCR Duplicates: 627 (0.20%)
Optical Duplicates: 143 (0.05%)
Library Complexity Estimate: 59,933,405
Intra-fragment Reads: 16,563 (5.22% / 6.05%)
Below MAPQ Threshold: 33,190 (10.47% / 12.13%)
Hi-C Contacts: 223,976 (70.65% / 81.82%)
 Ligation Motif Present: 144,011  (45.42% / 52.61%)
 3' Bias (Long Range): 71% - 29%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 58,655  (18.50% / 21.43%)
Intra-chromosomal: 165,321  (52.15% / 60.40%)
Short Range (<20Kb): 115,216  (36.34% / 42.09%)
Long Range (>20Kb): 50,105  (15.80% / 18.30%)