Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/ckit/52 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/ckit/52 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  317,031
 Normal Paired: 183,850 (57.99%)
 Chimeric Paired: 90,649 (28.59%)
 Chimeric Ambiguous: 41,325 (13.04%)
 Unmapped: 1,207 (0.38%)
 Ligation Motif Present: 243,559 (76.82%)
Alignable (Normal+Chimeric Paired): 274,499 (86.58%)
Unique Reads: 273,729 (86.34%)
PCR Duplicates: 627 (0.20%)
Optical Duplicates: 143 (0.05%)
Library Complexity Estimate: 59,933,405
Intra-fragment Reads: 16,563 (5.22% / 6.05%)
Below MAPQ Threshold: 48,082 (15.17% / 17.57%)
Hi-C Contacts: 209,084 (65.95% / 76.38%)
 Ligation Motif Present: 135,446  (42.72% / 49.48%)
 3' Bias (Long Range): 71% - 29%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 52,577  (16.58% / 19.21%)
Intra-chromosomal: 156,507  (49.37% / 57.18%)
Short Range (<20Kb): 110,386  (34.82% / 40.33%)
Long Range (>20Kb): 46,121  (14.55% / 16.85%)