Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/ckit/53 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/ckit/53 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  408,248
 Normal Paired: 142,916 (35.01%)
 Chimeric Paired: 134,580 (32.97%)
 Chimeric Ambiguous: 54,827 (13.43%)
 Unmapped: 75,925 (18.60%)
 Ligation Motif Present: 273,699 (67.04%)
Alignable (Normal+Chimeric Paired): 277,496 (67.97%)
Unique Reads: 268,642 (65.80%)
PCR Duplicates: 8,676 (2.13%)
Optical Duplicates: 178 (0.04%)
Library Complexity Estimate: 4,339,140
Intra-fragment Reads: 10,411 (2.55% / 3.88%)
Below MAPQ Threshold: 37,855 (9.27% / 14.09%)
Hi-C Contacts: 220,376 (53.98% / 82.03%)
 Ligation Motif Present: 139,062  (34.06% / 51.76%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 84,105  (20.60% / 31.31%)
Intra-chromosomal: 136,271  (33.38% / 50.73%)
Short Range (<20Kb): 73,245  (17.94% / 27.26%)
Long Range (>20Kb): 63,026  (15.44% / 23.46%)