Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/ckit/53 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/ckit/53 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  408,248
 Normal Paired: 142,916 (35.01%)
 Chimeric Paired: 134,580 (32.97%)
 Chimeric Ambiguous: 54,827 (13.43%)
 Unmapped: 75,925 (18.60%)
 Ligation Motif Present: 273,699 (67.04%)
Alignable (Normal+Chimeric Paired): 277,496 (67.97%)
Unique Reads: 268,642 (65.80%)
PCR Duplicates: 8,676 (2.13%)
Optical Duplicates: 178 (0.04%)
Library Complexity Estimate: 4,339,140
Intra-fragment Reads: 10,411 (2.55% / 3.88%)
Below MAPQ Threshold: 54,515 (13.35% / 20.29%)
Hi-C Contacts: 203,716 (49.90% / 75.83%)
 Ligation Motif Present: 130,474  (31.96% / 48.57%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 75,969  (18.61% / 28.28%)
Intra-chromosomal: 127,747  (31.29% / 47.55%)
Short Range (<20Kb): 69,538  (17.03% / 25.89%)
Long Range (>20Kb): 58,209  (14.26% / 21.67%)