Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/ckit/55 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/ckit/55 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  249,020
 Normal Paired: 101,334 (40.69%)
 Chimeric Paired: 107,915 (43.34%)
 Chimeric Ambiguous: 38,578 (15.49%)
 Unmapped: 1,193 (0.48%)
 Ligation Motif Present: 208,400 (83.69%)
Alignable (Normal+Chimeric Paired): 209,249 (84.03%)
Unique Reads: 208,763 (83.83%)
PCR Duplicates: 367 (0.15%)
Optical Duplicates: 119 (0.05%)
Library Complexity Estimate: 59,515,224
Intra-fragment Reads: 6,592 (2.65% / 3.16%)
Below MAPQ Threshold: 26,850 (10.78% / 12.86%)
Hi-C Contacts: 175,321 (70.40% / 83.98%)
 Ligation Motif Present: 106,307  (42.69% / 50.92%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 67,580  (27.14% / 32.37%)
Intra-chromosomal: 107,741  (43.27% / 51.61%)
Short Range (<20Kb): 52,198  (20.96% / 25.00%)
Long Range (>20Kb): 55,543  (22.30% / 26.61%)