Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/16_05_21/S19 -n S19 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/16_05_21/S19 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  71,222
 Normal Paired: 56,348 (79.12%)
 Chimeric Paired: 4,876 (6.85%)
 Chimeric Ambiguous: 1,455 (2.04%)
 Unmapped: 8,543 (11.99%)
 Ligation Motif Present: 11,082 (15.56%)
Alignable (Normal+Chimeric Paired): 61,224 (85.96%)
Unique Reads: 60,977 (85.62%)
PCR Duplicates: 152 (0.21%)
Optical Duplicates: 95 (0.13%)
Library Complexity Estimate: 12,271,571
Intra-fragment Reads: 9,502 (13.34% / 15.58%)
Below MAPQ Threshold: 11,319 (15.89% / 18.56%)
Hi-C Contacts: 40,156 (56.38% / 65.85%)
 Ligation Motif Present: 8,074  (11.34% / 13.24%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 26% - 24% - 25% - 25%
Inter-chromosomal: 8,212  (11.53% / 13.47%)
Intra-chromosomal: 31,944  (44.85% / 52.39%)
Short Range (<20Kb): 18,761  (26.34% / 30.77%)
Long Range (>20Kb): 13,182  (18.51% / 21.62%)