Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/16_05_21/S20 -n S20 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/16_05_21/S20 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  75,746
 Normal Paired: 46,303 (61.13%)
 Chimeric Paired: 5,380 (7.10%)
 Chimeric Ambiguous: 1,542 (2.04%)
 Unmapped: 22,521 (29.73%)
 Ligation Motif Present: 14,305 (18.89%)
Alignable (Normal+Chimeric Paired): 51,683 (68.23%)
Unique Reads: 51,570 (68.08%)
PCR Duplicates: 71 (0.09%)
Optical Duplicates: 42 (0.06%)
Library Complexity Estimate: 18,763,013
Intra-fragment Reads: 5,034 (6.65% / 9.76%)
Below MAPQ Threshold: 10,061 (13.28% / 19.51%)
Hi-C Contacts: 36,475 (48.15% / 70.73%)
 Ligation Motif Present: 9,707  (12.82% / 18.82%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 8,615  (11.37% / 16.71%)
Intra-chromosomal: 27,860  (36.78% / 54.02%)
Short Range (<20Kb): 12,679  (16.74% / 24.59%)
Long Range (>20Kb): 15,181  (20.04% / 29.44%)