Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/16_05_21/S1 -n S1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/16_05_21/S1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  44,066
 Normal Paired: 31,355 (71.15%)
 Chimeric Paired: 2,141 (4.86%)
 Chimeric Ambiguous: 1,013 (2.30%)
 Unmapped: 9,557 (21.69%)
 Ligation Motif Present: 257 (0.58%)
Alignable (Normal+Chimeric Paired): 33,496 (76.01%)
Unique Reads: 33,411 (75.82%)
PCR Duplicates: 44 (0.10%)
Optical Duplicates: 41 (0.09%)
Library Complexity Estimate: 12,707,448
Intra-fragment Reads: 8,572 (19.45% / 25.66%)
Below MAPQ Threshold: 6,097 (13.84% / 18.25%)
Hi-C Contacts: 18,742 (42.53% / 56.10%)
 Ligation Motif Present: 160  (0.36% / 0.48%)
 3' Bias (Long Range): 66% - 34%
 Pair Type %(L-I-O-R): 26% - 25% - 26% - 24%
Inter-chromosomal: 6,984  (15.85% / 20.90%)
Intra-chromosomal: 11,758  (26.68% / 35.19%)
Short Range (<20Kb): 6,813  (15.46% / 20.39%)
Long Range (>20Kb): 4,945  (11.22% / 14.80%)