Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/16_05_21/S2 -n S2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/16_05_21/S2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  125,022
 Normal Paired: 103,421 (82.72%)
 Chimeric Paired: 8,384 (6.71%)
 Chimeric Ambiguous: 2,622 (2.10%)
 Unmapped: 10,595 (8.47%)
 Ligation Motif Present: 56,564 (45.24%)
Alignable (Normal+Chimeric Paired): 111,805 (89.43%)
Unique Reads: 111,549 (89.22%)
PCR Duplicates: 67 (0.05%)
Optical Duplicates: 189 (0.15%)
Library Complexity Estimate: 92,933,921
Intra-fragment Reads: 4,806 (3.84% / 4.31%)
Below MAPQ Threshold: 20,514 (16.41% / 18.39%)
Hi-C Contacts: 86,229 (68.97% / 77.30%)
 Ligation Motif Present: 40,684  (32.54% / 36.47%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 24% - 25% - 25% - 26%
Inter-chromosomal: 16,999  (13.60% / 15.24%)
Intra-chromosomal: 69,230  (55.37% / 62.06%)
Short Range (<20Kb): 49,207  (39.36% / 44.11%)
Long Range (>20Kb): 20,023  (16.02% / 17.95%)