Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/16_05_21/S2 -n S2 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/16_05_21/S2 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  125,022
 Normal Paired: 103,421 (82.72%)
 Chimeric Paired: 8,384 (6.71%)
 Chimeric Ambiguous: 2,622 (2.10%)
 Unmapped: 10,595 (8.47%)
 Ligation Motif Present: 56,564 (45.24%)
Alignable (Normal+Chimeric Paired): 111,805 (89.43%)
Unique Reads: 111,549 (89.22%)
PCR Duplicates: 67 (0.05%)
Optical Duplicates: 189 (0.15%)
Library Complexity Estimate: 92,933,921
Intra-fragment Reads: 4,806 (3.84% / 4.31%)
Below MAPQ Threshold: 27,453 (21.96% / 24.61%)
Hi-C Contacts: 79,290 (63.42% / 71.08%)
 Ligation Motif Present: 37,576  (30.06% / 33.69%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 26%
Inter-chromosomal: 14,950  (11.96% / 13.40%)
Intra-chromosomal: 64,340  (51.46% / 57.68%)
Short Range (<20Kb): 46,240  (36.99% / 41.45%)
Long Range (>20Kb): 18,100  (14.48% / 16.23%)