Experiment description: Juicer version 1.5.6;2 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 2 -d /mnt/storage/home/manuriddinov/scratch/fastq/mm10/16_05_21/S3 -n S3 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/mm10/16_05_21/S3 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  40,901
 Normal Paired: 32,355 (79.11%)
 Chimeric Paired: 3,255 (7.96%)
 Chimeric Ambiguous: 1,149 (2.81%)
 Unmapped: 4,142 (10.13%)
 Ligation Motif Present: 15,118 (36.96%)
Alignable (Normal+Chimeric Paired): 35,610 (87.06%)
Unique Reads: 35,519 (86.84%)
PCR Duplicates: 24 (0.06%)
Optical Duplicates: 67 (0.16%)
Library Complexity Estimate: 26,307,002
Intra-fragment Reads: 3,193 (7.81% / 8.99%)
Below MAPQ Threshold: 6,920 (16.92% / 19.48%)
Hi-C Contacts: 25,406 (62.12% / 71.53%)
 Ligation Motif Present: 10,157  (24.83% / 28.60%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 7,638  (18.67% / 21.50%)
Intra-chromosomal: 17,768  (43.44% / 50.02%)
Short Range (<20Kb): 10,600  (25.92% / 29.84%)
Long Range (>20Kb): 7,168  (17.53% / 20.18%)