Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapF-6 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapF/CapF-6 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/CapF-6 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  52,721,041
 Normal Paired: 30,007,012 (56.92%)
 Chimeric Paired: 17,514,109 (33.22%)
 Chimeric Ambiguous: 4,705,454 (8.93%)
 Unmapped: 494,466 (0.94%)
 Ligation Motif Present: 40,163,746 (76.18%)
Alignable (Normal+Chimeric Paired): 47,521,121 (90.14%)
Unique Reads: 32,319,571 (61.30%)
PCR Duplicates: 2,491,487 (4.73%)
Optical Duplicates: 12,710,063 (24.11%)
Library Complexity Estimate: 231,442,410
Intra-fragment Reads: 1,483,257 (2.81% / 4.59%)
Below MAPQ Threshold: 4,901,704 (9.30% / 15.17%)
Hi-C Contacts: 25,934,610 (49.19% / 80.24%)
 Ligation Motif Present: 16,183,003  (30.70% / 50.07%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,980,744  (11.34% / 18.51%)
Intra-chromosomal: 19,953,866  (37.85% / 61.74%)
Short Range (<20Kb): 12,642,913  (23.98% / 39.12%)
Long Range (>20Kb): 7,310,927  (13.87% / 22.62%)