Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n Fibs_WT_1 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapF/CapF-1 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/CapF-1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU Sequenced Read Pairs: 43,492,586 Normal Paired: 17,582,679 (40.43%) Chimeric Paired: 19,620,737 (45.11%) Chimeric Ambiguous: 5,843,120 (13.43%) Unmapped: 446,050 (1.03%) Ligation Motif Present: 36,540,838 (84.02%) Alignable (Normal+Chimeric Paired): 37,203,416 (85.54%) Unique Reads: 27,685,395 (63.66%) PCR Duplicates: 614,701 (1.41%) Optical Duplicates: 8,903,320 (20.47%) Library Complexity Estimate: 641,983,303 Intra-fragment Reads: 857,024 (1.97% / 3.10%) Below MAPQ Threshold: 4,540,985 (10.44% / 16.40%) Hi-C Contacts: 22,287,386 (51.24% / 80.50%) Ligation Motif Present: 13,693,190 (31.48% / 49.46%) 3' Bias (Long Range): 78% - 22% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 8,907,835 (20.48% / 32.18%) Intra-chromosomal: 13,379,551 (30.76% / 48.33%) Short Range (<20Kb): 6,536,022 (15.03% / 23.61%) Long Range (>20Kb): 6,843,523 (15.73% / 24.72%)