Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapM-3 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapM/CapM-3 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/CapM-3 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  37,818,066
 Normal Paired: 17,401,187 (46.01%)
 Chimeric Paired: 16,025,269 (42.37%)
 Chimeric Ambiguous: 3,979,532 (10.52%)
 Unmapped: 412,078 (1.09%)
 Ligation Motif Present: 15,391,948 (40.70%)
Alignable (Normal+Chimeric Paired): 33,426,456 (88.39%)
Unique Reads: 28,524,275 (75.42%)
PCR Duplicates: 461,481 (1.22%)
Optical Duplicates: 4,440,700 (11.74%)
Library Complexity Estimate: 900,614,111
Intra-fragment Reads: 2,196,971 (5.81% / 7.70%)
Below MAPQ Threshold: 3,940,112 (10.42% / 13.81%)
Hi-C Contacts: 22,387,192 (59.20% / 78.48%)
 Ligation Motif Present: 6,765,645  (17.89% / 23.72%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,885,565  (12.92% / 17.13%)
Intra-chromosomal: 17,501,627  (46.28% / 61.36%)
Short Range (<20Kb): 5,916,541  (15.64% / 20.74%)
Long Range (>20Kb): 11,585,065  (30.63% / 40.61%)