Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -n CapM-4 -d /mnt/storage/home/manuriddinov/scratch/fastq/cHi-C/CapM/CapM-4 -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -o /mnt/storage/home/manuriddinov/scratch/Vertebrates/Cap/CapM-4 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  42,983,234
 Normal Paired: 19,992,802 (46.51%)
 Chimeric Paired: 18,137,503 (42.20%)
 Chimeric Ambiguous: 4,383,303 (10.20%)
 Unmapped: 469,626 (1.09%)
 Ligation Motif Present: 18,546,166 (43.15%)
Alignable (Normal+Chimeric Paired): 38,130,305 (88.71%)
Unique Reads: 31,558,728 (73.42%)
PCR Duplicates: 635,267 (1.48%)
Optical Duplicates: 5,936,310 (13.81%)
Library Complexity Estimate: 804,994,965
Intra-fragment Reads: 2,258,554 (5.25% / 7.16%)
Below MAPQ Threshold: 4,497,352 (10.46% / 14.25%)
Hi-C Contacts: 24,802,822 (57.70% / 78.59%)
 Ligation Motif Present: 7,944,195  (18.48% / 25.17%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 5,959,003  (13.86% / 18.88%)
Intra-chromosomal: 18,843,819  (43.84% / 59.71%)
Short Range (<20Kb): 6,431,176  (14.96% / 20.38%)
Long Range (>20Kb): 12,412,620  (28.88% / 39.33%)