Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 14 threads; openjdk version "17.0.12" 2024-07-16; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /storage3/nyt/Projects/Juicer-Out/2024-07-26-BGI/Embryo/525_K -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  20,167
 Normal Paired: 678 (3.36%)
 Chimeric Paired: 106 (0.53%)
 Chimeric Ambiguous: 20 (0.10%)
 Unmapped: 19,363 (96.01%)
 Ligation Motif Present: 196 (0.97%)
Alignable (Normal+Chimeric Paired): 784 (3.89%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-06T14:18:43,771]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 774 (3.84%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 10 (0.05%)
Library Complexity Estimate: 0
Intra-fragment Reads: 139 (0.69% / 17.96%)
Below MAPQ Threshold: 360 (1.79% / 46.51%)
Hi-C Contacts: 414 (2.05% / 53.49%)
 Ligation Motif Present: 125  (0.62% / 16.15%)
 3' Bias (Long Range): 55% - 45%
 Pair Type intra chrom %(L-I-O-R): 5% - 83% - 7% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 29% - 12% - 33%
 DE: 75%
 Cis/all (FF and RR orient): 74.1%
Inter-chromosomal: 24  (0.12% / 3.10%)
Intra-chromosomal: 390  (1.93% / 50.39%)
Short Range (<20,000bp): 322  (1.60% / 41.60%)
Long Range (>20,000bp): 68  (0.34% / 8.79%)