Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Aks1_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  83,447
 Normal Paired: 41,768 (50.05%)
 Chimeric Paired: 1,801 (2.16%)
 Chimeric Ambiguous: 1,402 (1.68%)
 Unmapped: 38,476 (46.11%)
 Ligation Motif Present: 1,349 (1.62%)
Alignable (Normal+Chimeric Paired): 43,569 (52.21%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T08:04:11,450]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 32,786 (39.29%)
PCR Duplicates: 10,290 (12.33%)
Optical Duplicates: 493 (0.59%)
Library Complexity Estimate: 75,145
Intra-fragment Reads: 3,757 (4.50% / 11.46%)
Below MAPQ Threshold: 3,761 (4.51% / 11.47%)
Hi-C Contacts: 25,268 (30.28% / 77.07%)
 Ligation Motif Present: 623  (0.75% / 1.90%)
 3' Bias (Long Range): 38% - 62%
 Pair Type intra chrom %(L-I-O-R): 1% - 97% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 22% - 28% - 24% - 25%
 DE: 94%
 Cis/all (FF and RR orient): 59.5%
Inter-chromosomal: 671  (0.80% / 2.05%)
Intra-chromosomal: 24,597  (29.48% / 75.02%)
Short Range (<20,000bp): 24,090  (28.87% / 73.48%)
Long Range (>20,000bp): 507  (0.61% / 1.55%)