Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 14 threads; openjdk version "17.0.12" 2024-07-16; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /storage3/nyt/Projects/Juicer-Out/2024-07-26-BGI/Embryo/Aks_K -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  140,240
 Normal Paired: 3,294 (2.35%)
 Chimeric Paired: 287 (0.20%)
 Chimeric Ambiguous: 108 (0.08%)
 Unmapped: 136,551 (97.37%)
 Ligation Motif Present: 716 (0.51%)
Alignable (Normal+Chimeric Paired): 3,581 (2.55%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-06T15:00:27,487]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 3,552 (2.53%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 29 (0.02%)
Library Complexity Estimate: 0
Intra-fragment Reads: 419 (0.30% / 11.80%)
Below MAPQ Threshold: 2,189 (1.56% / 61.63%)
Hi-C Contacts: 1,363 (0.97% / 38.37%)
 Ligation Motif Present: 304  (0.22% / 8.56%)
 3' Bias (Long Range): 54% - 46%
 Pair Type intra chrom %(L-I-O-R): 7% - 83% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 28% - 26% - 25% - 22%
 DE: 62%
 Cis/all (FF and RR orient): 50.2%
Inter-chromosomal: 260  (0.19% / 7.32%)
Intra-chromosomal: 1,103  (0.79% / 31.05%)
Short Range (<20,000bp): 918  (0.65% / 25.84%)
Long Range (>20,000bp): 185  (0.13% / 5.21%)