Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/BOC_K1 -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  18,513,240
 Normal Paired: 8,534,183 (46.10%)
 Chimeric Paired: 6,975,128 (37.68%)
 Chimeric Ambiguous: 2,048,915 (11.07%)
 Unmapped: 955,014 (5.16%)
 Ligation Motif Present: 13,286,082 (71.77%)
Alignable (Normal+Chimeric Paired): 15,509,311 (83.77%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T09:39:40,744]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 4,318,201 (23.32%)
PCR Duplicates: 11,113,888 (60.03%)
Optical Duplicates: 77,222 (0.42%)
Library Complexity Estimate: 4,458,095
Intra-fragment Reads: 290,245 (1.57% / 6.72%)
Below MAPQ Threshold: 1,050,042 (5.67% / 24.32%)
Hi-C Contacts: 2,977,914 (16.09% / 68.96%)
 Ligation Motif Present: 2,256,439  (12.19% / 52.25%)
 3' Bias (Long Range): 74% - 26%
 Pair Type intra chrom %(L-I-O-R): 16% - 53% - 15% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 30%
 Cis/all (FF and RR orient): 74.8%
Inter-chromosomal: 522,914  (2.82% / 12.11%)
Intra-chromosomal: 2,455,000  (13.26% / 56.85%)
Short Range (<20,000bp): 1,343,259  (7.26% / 31.11%)
Long Range (>20,000bp): 1,111,741  (6.01% / 25.75%)