Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/BOC_e1 -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  17,800,507
 Normal Paired: 8,918,485 (50.10%)
 Chimeric Paired: 6,395,802 (35.93%)
 Chimeric Ambiguous: 1,971,623 (11.08%)
 Unmapped: 514,597 (2.89%)
 Ligation Motif Present: 12,616,874 (70.88%)
Alignable (Normal+Chimeric Paired): 15,314,287 (86.03%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T08:45:38,918]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 5,720,684 (32.14%)
PCR Duplicates: 9,466,324 (53.18%)
Optical Duplicates: 127,279 (0.72%)
Library Complexity Estimate: 6,280,078
Intra-fragment Reads: 327,538 (1.84% / 5.73%)
Below MAPQ Threshold: 1,121,705 (6.30% / 19.61%)
Hi-C Contacts: 4,271,441 (24.00% / 74.67%)
 Ligation Motif Present: 3,071,894  (17.26% / 53.70%)
 3' Bias (Long Range): 70% - 30%
 Pair Type intra chrom %(L-I-O-R): 17% - 51% - 16% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 29%
 Cis/all (FF and RR orient): 81.7%
Inter-chromosomal: 552,500  (3.10% / 9.66%)
Intra-chromosomal: 3,718,941  (20.89% / 65.01%)
Short Range (<20,000bp): 1,998,850  (11.23% / 34.94%)
Long Range (>20,000bp): 1,720,091  (9.66% / 30.07%)