Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 14 threads; openjdk version "17.0.12" 2024-07-16; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /storage3/nyt/Projects/Juicer-Out/2024-07-26-BGI/Embryo/Bag4_K -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  22,447
 Normal Paired: 1,340 (5.97%)
 Chimeric Paired: 362 (1.61%)
 Chimeric Ambiguous: 82 (0.37%)
 Unmapped: 20,663 (92.05%)
 Ligation Motif Present: 654 (2.91%)
Alignable (Normal+Chimeric Paired): 1,702 (7.58%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-06T15:00:50,320]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 1,690 (7.53%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 12 (0.05%)
Library Complexity Estimate: 0
Intra-fragment Reads: 190 (0.85% / 11.24%)
Below MAPQ Threshold: 382 (1.70% / 22.60%)
Hi-C Contacts: 1,308 (5.83% / 77.40%)
 Ligation Motif Present: 486  (2.17% / 28.76%)
 3' Bias (Long Range): 59% - 41%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 23% - 24% - 26% - 26%
 DE: 54%
 Cis/all (FF and RR orient): 83.6%
Inter-chromosomal: 99  (0.44% / 5.86%)
Intra-chromosomal: 1,209  (5.39% / 71.54%)
Short Range (<20,000bp): 847  (3.77% / 50.12%)
Long Range (>20,000bp): 362  (1.61% / 21.42%)