Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Bal1_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  55,192
 Normal Paired: 31,209 (56.55%)
 Chimeric Paired: 1,112 (2.01%)
 Chimeric Ambiguous: 723 (1.31%)
 Unmapped: 22,148 (40.13%)
 Ligation Motif Present: 999 (1.81%)
Alignable (Normal+Chimeric Paired): 32,321 (58.56%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T08:04:49,976]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 25,381 (45.99%)
PCR Duplicates: 6,584 (11.93%)
Optical Duplicates: 356 (0.65%)
Library Complexity Estimate: 66,526
Intra-fragment Reads: 6,381 (11.56% / 25.14%)
Below MAPQ Threshold: 2,988 (5.41% / 11.77%)
Hi-C Contacts: 16,012 (29.01% / 63.09%)
 Ligation Motif Present: 448  (0.81% / 1.77%)
 3' Bias (Long Range): 40% - 60%
 Pair Type intra chrom %(L-I-O-R): 1% - 97% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 24% - 23% - 26% - 28%
 DE: 93%
 Cis/all (FF and RR orient): 59.5%
Inter-chromosomal: 476  (0.86% / 1.88%)
Intra-chromosomal: 15,536  (28.15% / 61.21%)
Short Range (<20,000bp): 15,170  (27.49% / 59.77%)
Long Range (>20,000bp): 366  (0.66% / 1.44%)