Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Bal2_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  94,102
 Normal Paired: 15,830 (16.82%)
 Chimeric Paired: 840 (0.89%)
 Chimeric Ambiguous: 780 (0.83%)
 Unmapped: 76,652 (81.46%)
 Ligation Motif Present: 754 (0.80%)
Alignable (Normal+Chimeric Paired): 16,670 (17.71%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T08:05:27,106]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 12,408 (13.19%)
PCR Duplicates: 4,116 (4.37%)
Optical Duplicates: 146 (0.16%)
Library Complexity Estimate: 27,395
Intra-fragment Reads: 5,451 (5.79% / 43.93%)
Below MAPQ Threshold: 1,844 (1.96% / 14.86%)
Hi-C Contacts: 5,113 (5.43% / 41.21%)
 Ligation Motif Present: 81  (0.09% / 0.65%)
 3' Bias (Long Range): 53% - 47%
 Pair Type intra chrom %(L-I-O-R): 1% - 98% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 19% - 23% - 25% - 33%
 DE: 94%
 Cis/all (FF and RR orient): 46.6%
Inter-chromosomal: 166  (0.18% / 1.34%)
Intra-chromosomal: 4,947  (5.26% / 39.87%)
Short Range (<20,000bp): 4,880  (5.19% / 39.33%)
Long Range (>20,000bp): 67  (0.07% / 0.54%)