Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/Embryo/Boc_K4 -s DpnII -y /data/nyt/MMO/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  520,701
 Normal Paired: 223,649 (42.95%)
 Chimeric Paired: 238,064 (45.72%)
 Chimeric Ambiguous: 48,770 (9.37%)
 Unmapped: 10,218 (1.96%)
 Ligation Motif Present: 428,026 (82.20%)
Alignable (Normal+Chimeric Paired): 461,713 (88.67%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T16:32:02,888]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 196,969 (37.83%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 264,744 (50.84%)
Library Complexity Estimate: 0
Intra-fragment Reads: 7,684 (1.48% / 3.90%)
Below MAPQ Threshold: 31,802 (6.11% / 16.15%)
Hi-C Contacts: 157,483 (30.24% / 79.95%)
 Ligation Motif Present: 129,376  (24.85% / 65.68%)
 3' Bias (Long Range): 78% - 22%
 Pair Type intra chrom %(L-I-O-R): 14% - 57% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 33%
 Cis/all (FF and RR orient): 66.8%
Inter-chromosomal: 35,084  (6.74% / 17.81%)
Intra-chromosomal: 122,399  (23.51% / 62.14%)
Short Range (<20,000bp): 66,598  (12.79% / 33.81%)
Long Range (>20,000bp): 55,801  (10.72% / 28.33%)