Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-11-20-BGI/Embryo/Boc_e4 -s DpnII -y /data/nyt/MMO/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/MMO/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
Sequenced Read Pairs:  472,672
 Normal Paired: 220,848 (46.72%)
 Chimeric Paired: 201,624 (42.66%)
 Chimeric Ambiguous: 46,086 (9.75%)
 Unmapped: 4,114 (0.87%)
 Ligation Motif Present: 362,694 (76.73%)
Alignable (Normal+Chimeric Paired): 422,472 (89.38%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-11-22T16:30:16,236]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 401,814 (85.01%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 20,658 (4.37%)
Library Complexity Estimate: 0
Intra-fragment Reads: 20,842 (4.41% / 5.19%)
Below MAPQ Threshold: 37,323 (7.90% / 9.29%)
Hi-C Contacts: 343,649 (72.70% / 85.52%)
 Ligation Motif Present: 271,135  (57.36% / 67.48%)
 3' Bias (Long Range): 74% - 26%
 Pair Type intra chrom %(L-I-O-R): 16% - 52% - 16% - 16%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 32%
 Cis/all (FF and RR orient): 81.2%
Inter-chromosomal: 43,918  (9.29% / 10.93%)
Intra-chromosomal: 299,731  (63.41% / 74.59%)
Short Range (<20,000bp): 165,182  (34.95% / 41.11%)
Long Range (>20,000bp): 134,549  (28.47% / 33.49%)