Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/CHR_K1 -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  17,654,530
 Normal Paired: 8,772,999 (49.69%)
 Chimeric Paired: 6,195,114 (35.09%)
 Chimeric Ambiguous: 2,142,436 (12.14%)
 Unmapped: 543,981 (3.08%)
 Ligation Motif Present: 12,495,338 (70.78%)
Alignable (Normal+Chimeric Paired): 14,968,113 (84.78%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:17:44,269]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 5,574,105 (31.57%)
PCR Duplicates: 9,269,739 (52.51%)
Optical Duplicates: 124,269 (0.70%)
Library Complexity Estimate: 6,113,316
Intra-fragment Reads: 324,744 (1.84% / 5.83%)
Below MAPQ Threshold: 1,095,382 (6.20% / 19.65%)
Hi-C Contacts: 4,153,979 (23.53% / 74.52%)
 Ligation Motif Present: 2,942,926  (16.67% / 52.80%)
 3' Bias (Long Range): 70% - 30%
 Pair Type intra chrom %(L-I-O-R): 17% - 50% - 16% - 17%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 72.7%
Inter-chromosomal: 832,076  (4.71% / 14.93%)
Intra-chromosomal: 3,321,903  (18.82% / 59.60%)
Short Range (<20,000bp): 1,636,885  (9.27% / 29.37%)
Long Range (>20,000bp): 1,685,018  (9.54% / 30.23%)