Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/CHR_e1 -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  15,495,647
 Normal Paired: 7,693,083 (49.65%)
 Chimeric Paired: 5,459,911 (35.24%)
 Chimeric Ambiguous: 1,913,358 (12.35%)
 Unmapped: 429,295 (2.77%)
 Ligation Motif Present: 10,425,933 (67.28%)
Alignable (Normal+Chimeric Paired): 13,152,994 (84.88%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T10:25:41,728]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 6,625,051 (42.75%)
PCR Duplicates: 6,392,126 (41.25%)
Optical Duplicates: 135,817 (0.88%)
Library Complexity Estimate: 8,418,627
Intra-fragment Reads: 554,591 (3.58% / 8.37%)
Below MAPQ Threshold: 1,112,735 (7.18% / 16.80%)
Hi-C Contacts: 4,957,725 (31.99% / 74.83%)
 Ligation Motif Present: 3,504,394  (22.62% / 52.90%)
 3' Bias (Long Range): 71% - 29%
 Pair Type intra chrom %(L-I-O-R): 15% - 54% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 29%
 Cis/all (FF and RR orient): 65.6%
Inter-chromosomal: 1,212,370  (7.82% / 18.30%)
Intra-chromosomal: 3,745,355  (24.17% / 56.53%)
Short Range (<20,000bp): 1,939,835  (12.52% / 29.28%)
Long Range (>20,000bp): 1,805,520  (11.65% / 27.25%)