Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 14 threads; openjdk version "17.0.12" 2024-07-16; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /storage3/nyt/Projects/Juicer-Out/2024-07-26-BGI/Embryo/Cher2_K -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  6,986
 Normal Paired: 144 (2.06%)
 Chimeric Paired: 13 (0.19%)
 Chimeric Ambiguous: 4 (0.06%)
 Unmapped: 6,825 (97.70%)
 Ligation Motif Present: 37 (0.53%)
Alignable (Normal+Chimeric Paired): 157 (2.25%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-06T15:01:10,364]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 157 (2.25%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 0
Intra-fragment Reads: 22 (0.31% / 14.01%)
Below MAPQ Threshold: 99 (1.42% / 63.06%)
Hi-C Contacts: 58 (0.83% / 36.94%)
 Ligation Motif Present: 17  (0.24% / 10.83%)
 3' Bias (Long Range): 54% - 46%
 Pair Type intra chrom %(L-I-O-R): 7% - 83% - 6% - 4%
 Pair Type inter chrom %(L-I-O-R): 75% - 0% - 0% - 25%
 DE: 72%
 Cis/all (FF and RR orient): 60.0%
Inter-chromosomal: 4  (0.06% / 2.55%)
Intra-chromosomal: 54  (0.77% / 34.39%)
Short Range (<20,000bp): 45  (0.64% / 28.66%)
Long Range (>20,000bp): 9  (0.13% / 5.73%)