Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Droz_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  47,640
 Normal Paired: 33,635 (70.60%)
 Chimeric Paired: 1,636 (3.43%)
 Chimeric Ambiguous: 899 (1.89%)
 Unmapped: 11,470 (24.08%)
 Ligation Motif Present: 2,343 (4.92%)
Alignable (Normal+Chimeric Paired): 35,271 (74.04%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:28:19,510]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 28,376 (59.56%)
PCR Duplicates: 6,507 (13.66%)
Optical Duplicates: 388 (0.81%)
Library Complexity Estimate: 81,470
Intra-fragment Reads: 1,372 (2.88% / 4.84%)
Below MAPQ Threshold: 2,809 (5.90% / 9.90%)
Hi-C Contacts: 24,195 (50.79% / 85.27%)
 Ligation Motif Present: 1,253  (2.63% / 4.42%)
 3' Bias (Long Range): 36% - 64%
 Pair Type intra chrom %(L-I-O-R): 2% - 94% - 2% - 2%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 26%
 DE: 90%
 Cis/all (FF and RR orient): 70.2%
Inter-chromosomal: 738  (1.55% / 2.60%)
Intra-chromosomal: 23,457  (49.24% / 82.66%)
Short Range (<20,000bp): 22,242  (46.69% / 78.38%)
Long Range (>20,000bp): 1,215  (2.55% / 4.28%)