Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Embryos_Yana/EB-2 -s DpnII -y /storage2/dreamworld/Databases/hg19_canonical/juicer.rs/hg19_canonical.rs.DpnII.txt -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  109,807
 Normal Paired: 103,117 (93.91%)
 Chimeric Paired: 567 (0.52%)
 Chimeric Ambiguous: 358 (0.33%)
 Unmapped: 5,765 (5.25%)
 Ligation Motif Present: 628 (0.57%)
Alignable (Normal+Chimeric Paired): 103,684 (94.42%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-11-18T11:44:14,838]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 103,206 (93.99%)
PCR Duplicates: 478 (0.44%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 11,210,570
Intra-fragment Reads: 80,358 (73.18% / 77.86%)
Below MAPQ Threshold: 6,253 (5.69% / 6.06%)
Hi-C Contacts: 16,595 (15.11% / 16.08%)
 Ligation Motif Present: 362  (0.33% / 0.35%)
 3' Bias (Long Range): 83% - 17%
 Pair Type intra chrom %(L-I-O-R): 1% - 98% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 20% - 27% - 28% - 24%
 DE: 93%
 Cis/all (FF and RR orient): 42.4%
Inter-chromosomal: 731  (0.67% / 0.71%)
Intra-chromosomal: 15,864  (14.45% / 15.37%)
Short Range (<20,000bp): 15,522  (14.14% / 15.04%)
Long Range (>20,000bp): 342  (0.31% / 0.33%)