Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 10 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/amivanov/Tools/juicer1.6_compact-main/scripts/juicer.sh -g T2T -d /data/amivanov/Projects/Embryos/2025-04-24_BGI/A/Ezh1_K -s DpnII -y /data/amivanov/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/amivanov/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/amivanov/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/amivanov/Tools/juicer1.6_compact-main -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  3,899
 Normal Paired: 2,055 (52.71%)
 Chimeric Paired: 770 (19.75%)
 Chimeric Ambiguous: 477 (12.23%)
 Unmapped: 597 (15.31%)
 Ligation Motif Present: 47 (1.21%)
Alignable (Normal+Chimeric Paired): 2,825 (72.45%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-26T16:04:06,492]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 1,135 (29.11%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,690 (43.34%)
Library Complexity Estimate: 0
Intra-fragment Reads: 449 (11.52% / 39.56%)
Below MAPQ Threshold: 283 (7.26% / 24.93%)
Hi-C Contacts: 852 (21.85% / 75.07%)
 Ligation Motif Present: 24  (0.62% / 2.11%)
 3' Bias (Long Range): 48% - 52%
 Pair Type intra chrom %(L-I-O-R): 2% - 95% - 2% - 1%
 Pair Type inter chrom %(L-I-O-R): 23% - 16% - 36% - 25%
 DE: 75%
 Cis/all (FF and RR orient): 22.3%
Inter-chromosomal: 166  (4.26% / 14.63%)
Intra-chromosomal: 686  (17.59% / 60.44%)
Short Range (<20,000bp): 656  (16.82% / 57.80%)
Long Range (>20,000bp): 30  (0.77% / 2.64%)