Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Fed3_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  113,562
 Normal Paired: 50,030 (44.06%)
 Chimeric Paired: 3,725 (3.28%)
 Chimeric Ambiguous: 3,600 (3.17%)
 Unmapped: 56,207 (49.49%)
 Ligation Motif Present: 3,127 (2.75%)
Alignable (Normal+Chimeric Paired): 53,755 (47.34%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:29:05,968]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 40,483 (35.65%)
PCR Duplicates: 12,691 (11.18%)
Optical Duplicates: 581 (0.51%)
Library Complexity Estimate: 92,859
Intra-fragment Reads: 8,009 (7.05% / 19.78%)
Below MAPQ Threshold: 5,200 (4.58% / 12.84%)
Hi-C Contacts: 27,274 (24.02% / 67.37%)
 Ligation Motif Present: 1,515  (1.33% / 3.74%)
 3' Bias (Long Range): 42% - 58%
 Pair Type intra chrom %(L-I-O-R): 2% - 93% - 2% - 2%
 Pair Type inter chrom %(L-I-O-R): 22% - 25% - 27% - 26%
 DE: 86%
 Cis/all (FF and RR orient): 64.7%
Inter-chromosomal: 1,391  (1.22% / 3.44%)
Intra-chromosomal: 25,883  (22.79% / 63.94%)
Short Range (<20,000bp): 24,148  (21.26% / 59.65%)
Long Range (>20,000bp): 1,735  (1.53% / 4.29%)