Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 10 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/amivanov/Tools/juicer1.6_compact-main/scripts/juicer.sh -g T2T -d /data/amivanov/Projects/Embryos/2025-04-24_BGI/A/Fed3cycle2_K -s DpnII -y /data/amivanov/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/amivanov/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/amivanov/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/amivanov/Tools/juicer1.6_compact-main -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  807,760
 Normal Paired: 361,420 (44.74%)
 Chimeric Paired: 107,443 (13.30%)
 Chimeric Ambiguous: 15,188 (1.88%)
 Unmapped: 323,709 (40.07%)
 Ligation Motif Present: 222,568 (27.55%)
Alignable (Normal+Chimeric Paired): 468,863 (58.04%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-26T16:05:35,856]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 14,926 (1.85%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 453,937 (56.20%)
Library Complexity Estimate: 0
Intra-fragment Reads: 926 (0.11% / 6.20%)
Below MAPQ Threshold: 8,826 (1.09% / 59.13%)
Hi-C Contacts: 6,100 (0.76% / 40.87%)
 Ligation Motif Present: 1,901  (0.24% / 12.74%)
 3' Bias (Long Range): 64% - 36%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 8% - 7%
 Pair Type inter chrom %(L-I-O-R): 28% - 26% - 24% - 22%
 DE: 65%
 Cis/all (FF and RR orient): 66.0%
Inter-chromosomal: 732  (0.09% / 4.90%)
Intra-chromosomal: 5,368  (0.66% / 35.96%)
Short Range (<20,000bp): 4,362  (0.54% / 29.22%)
Long Range (>20,000bp): 1,006  (0.12% / 6.74%)