Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 8 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /beegfs/scratch/ws/ws1/torgunakov-workoct/Juicer-Out/2024-11-20-MyGenetics/Embryo/Fisher1_K -s DpnII -y /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workoct/Databases/T2T-CHM13v2.0/hgT2T.fa -D /home/torgunakov/Tools/juicer1.6_compact -t 8                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  85,284
 Normal Paired: 43,993 (51.58%)
 Chimeric Paired: 27,703 (32.48%)
 Chimeric Ambiguous: 11,389 (13.35%)
 Unmapped: 2,199 (2.58%)
 Ligation Motif Present: 1,256 (1.47%)
Alignable (Normal+Chimeric Paired): 71,696 (84.07%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-25T12:41:48,671]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 71,605 (83.96%)
PCR Duplicates: 69 (0.08%)
Optical Duplicates: 22 (0.03%)
Library Complexity Estimate: 37,201,918
Intra-fragment Reads: 47,308 (55.47% / 66.07%)
Below MAPQ Threshold: 5,634 (6.61% / 7.87%)
Hi-C Contacts: 65,971 (77.35% / 92.13%)
 Ligation Motif Present: 817  (0.96% / 1.14%)
 3' Bias (Long Range): 42% - 58%
 Pair Type intra chrom %(L-I-O-R): 3% - 91% - 2% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 24% - 25%
 DE: 76%
 Cis/all (FF and RR orient): 50.7%
Inter-chromosomal: 7,769  (9.11% / 10.85%)
Intra-chromosomal: 58,202  (68.24% / 81.28%)
Short Range (<20,000bp): 57,398  (67.30% / 80.16%)
Long Range (>20,000bp): 804  (0.94% / 1.12%)