Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 14 threads; openjdk version "17.0.12" 2024-07-16; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /storage3/nyt/Projects/Juicer-Out/2024-07-26-BGI/Embryo/Fuks2_K2 -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  48,863
 Normal Paired: 718 (1.47%)
 Chimeric Paired: 17 (0.03%)
 Chimeric Ambiguous: 10 (0.02%)
 Unmapped: 48,118 (98.48%)
 Ligation Motif Present: 104 (0.21%)
Alignable (Normal+Chimeric Paired): 735 (1.50%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-06T15:01:29,023]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 720 (1.47%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 15 (0.03%)
Library Complexity Estimate: 0
Intra-fragment Reads: 115 (0.24% / 15.97%)
Below MAPQ Threshold: 516 (1.06% / 71.67%)
Hi-C Contacts: 204 (0.42% / 28.33%)
 Ligation Motif Present: 14  (0.03% / 1.94%)
 3' Bias (Long Range): 48% - 52%
 Pair Type intra chrom %(L-I-O-R): 0% - 95% - 3% - 2%
 Pair Type inter chrom %(L-I-O-R): 39% - 17% - 33% - 11%
 DE: 87%
 Cis/all (FF and RR orient): 30.8%
Inter-chromosomal: 18  (0.04% / 2.50%)
Intra-chromosomal: 186  (0.38% / 25.83%)
Short Range (<20,000bp): 176  (0.36% / 24.44%)
Long Range (>20,000bp): 10  (0.02% / 1.39%)