Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Isa1_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  126,929
 Normal Paired: 50,730 (39.97%)
 Chimeric Paired: 2,117 (1.67%)
 Chimeric Ambiguous: 2,652 (2.09%)
 Unmapped: 71,430 (56.28%)
 Ligation Motif Present: 2,873 (2.26%)
Alignable (Normal+Chimeric Paired): 52,847 (41.64%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:29:53,779]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 39,353 (31.00%)
PCR Duplicates: 12,817 (10.10%)
Optical Duplicates: 677 (0.53%)
Library Complexity Estimate: 87,961
Intra-fragment Reads: 3,938 (3.10% / 10.01%)
Below MAPQ Threshold: 4,411 (3.48% / 11.21%)
Hi-C Contacts: 31,004 (24.43% / 78.78%)
 Ligation Motif Present: 1,125  (0.89% / 2.86%)
 3' Bias (Long Range): 37% - 63%
 Pair Type intra chrom %(L-I-O-R): 1% - 97% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 25% - 24% - 24% - 27%
 DE: 92%
 Cis/all (FF and RR orient): 55.4%
Inter-chromosomal: 1,017  (0.80% / 2.58%)
Intra-chromosomal: 29,987  (23.63% / 76.20%)
Short Range (<20,000bp): 29,004  (22.85% / 73.70%)
Long Range (>20,000bp): 983  (0.77% / 2.50%)