Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.13" 2021-10-19; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g hg19 -z /Data/DataBases/hg19_Canonic/hg19.fa -p /Data/DataBases/hg19_Canonic/hg19.chrom.sizes -s DpnII -y /Data/DataBases/hg19_Canonic/hg19_DpnII_RS.txt -d /Data/NGS_Data/20211228_NGS_MinjaF_Pool/Results/Human_HiC/K1 Sequenced Read Pairs: 279,365 Normal Paired: 138,432 (49.55%) Chimeric Paired: 92,842 (33.23%) Chimeric Ambiguous: 20,859 (7.47%) Unmapped: 27,232 (9.75%) Ligation Motif Present: 167,656 (60.01%) Alignable (Normal+Chimeric Paired): 231,274 (82.79%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-12-28T14:40:48,656] [Globals.java:138] [main] Development mode is enabled Unique Reads: 175,947 (62.98%) PCR Duplicates: 51,823 (18.55%) Optical Duplicates: 3,504 (1.25%) Library Complexity Estimate: 421,326 Intra-fragment Reads: 8,221 (2.94% / 4.67%) Below MAPQ Threshold: 26,562 (9.51% / 15.10%) Hi-C Contacts: 141,164 (50.53% / 80.23%) Ligation Motif Present: 93,813 (33.58% / 53.32%) 3' Bias (Long Range): 67% - 33% Pair Type %(L-I-O-R): 25% - 25% - 25% - 25% Inter-chromosomal: 15,544 (5.56% / 8.83%) Intra-chromosomal: 125,620 (44.97% / 71.40%) Short Range (<20Kb): 59,027 (21.13% / 33.55%) Long Range (>20Kb): 66,593 (23.84% / 37.85%)