Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g hg19 -z /Data/DataBases/hg19_Canonic/hg19.fa -p /Data/DataBases/hg19_Canonic/hg19.chrom.sizes -s DpnII -y /Data/DataBases/hg19_Canonic/hg19_DpnII_RS.txt -d /Data/NGS_Data/20211027_Maria_NGS_data_run139/Result/hg19/scK562_1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  63,895
 Normal Paired: 24,505 (38.35%)
 Chimeric Paired: 7,900 (12.36%)
 Chimeric Ambiguous: 11,749 (18.39%)
 Unmapped: 19,741 (30.90%)
 Ligation Motif Present: 18,676 (29.23%)
Alignable (Normal+Chimeric Paired): 32,405 (50.72%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-11-10T19:50:55,684]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 15,031 (23.52%)
PCR Duplicates: 17,366 (27.18%)
Optical Duplicates: 8 (0.01%)
Library Complexity Estimate: 18,012
Intra-fragment Reads: 1,000 (1.57% / 6.65%)
Below MAPQ Threshold: 6,921 (10.83% / 46.04%)
Hi-C Contacts: 7,110 (11.13% / 47.30%)
 Ligation Motif Present: 3,825  (5.99% / 25.45%)
 3' Bias (Long Range): 51% - 49%
 Pair Type %(L-I-O-R): 24% - 25% - 25% - 26%
Inter-chromosomal: 2,442  (3.82% / 16.25%)
Intra-chromosomal: 4,668  (7.31% / 31.06%)
Short Range (<20Kb): 3,339  (5.23% / 22.21%)
Long Range (>20Kb): 1,329  (2.08% / 8.84%)