Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g hg19 -z /Data/DataBases/hg19_Canonic/hg19.fa -p /Data/DataBases/hg19_Canonic/hg19.chrom.sizes -s DpnII -y /Data/DataBases/hg19_Canonic/hg19_DpnII_RS.txt -d /Data/NGS_Data/20211027_Maria_NGS_data_run139/Result/hg19/scK562_3                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  47,767
 Normal Paired: 18,325 (38.36%)
 Chimeric Paired: 5,775 (12.09%)
 Chimeric Ambiguous: 10,937 (22.90%)
 Unmapped: 12,730 (26.65%)
 Ligation Motif Present: 14,223 (29.78%)
Alignable (Normal+Chimeric Paired): 24,100 (50.45%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-11-10T19:53:09,348]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 12,145 (25.43%)
PCR Duplicates: 11,947 (25.01%)
Optical Duplicates: 8 (0.02%)
Library Complexity Estimate: 15,328
Intra-fragment Reads: 755 (1.58% / 6.22%)
Below MAPQ Threshold: 6,003 (12.57% / 49.43%)
Hi-C Contacts: 5,387 (11.28% / 44.36%)
 Ligation Motif Present: 2,678  (5.61% / 22.05%)
 3' Bias (Long Range): 51% - 49%
 Pair Type %(L-I-O-R): 24% - 27% - 23% - 26%
Inter-chromosomal: 2,632  (5.51% / 21.67%)
Intra-chromosomal: 2,755  (5.77% / 22.68%)
Short Range (<20Kb): 1,878  (3.93% / 15.46%)
Long Range (>20Kb): 877  (1.84% / 7.22%)