Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g hg19 -z /Data/DataBases/hg19_Canonic/hg19.fa -p /Data/DataBases/hg19_Canonic/hg19.chrom.sizes -s DpnII -y /Data/DataBases/hg19_Canonic/hg19_DpnII_RS.txt -d /Data/NGS_Data/20211027_Maria_NGS_data_run139/Result/hg19/scK562_5                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  75,659
 Normal Paired: 18,749 (24.78%)
 Chimeric Paired: 5,935 (7.84%)
 Chimeric Ambiguous: 14,881 (19.67%)
 Unmapped: 36,094 (47.71%)
 Ligation Motif Present: 32,464 (42.91%)
Alignable (Normal+Chimeric Paired): 24,684 (32.63%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-11-10T19:55:21,804]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 15,341 (20.28%)
PCR Duplicates: 9,329 (12.33%)
Optical Duplicates: 14 (0.02%)
Library Complexity Estimate: 23,736
Intra-fragment Reads: 502 (0.66% / 3.27%)
Below MAPQ Threshold: 7,681 (10.15% / 50.07%)
Hi-C Contacts: 7,158 (9.46% / 46.66%)
 Ligation Motif Present: 4,424  (5.85% / 28.84%)
 3' Bias (Long Range): 55% - 45%
 Pair Type %(L-I-O-R): 23% - 27% - 26% - 24%
Inter-chromosomal: 2,500  (3.30% / 16.30%)
Intra-chromosomal: 4,658  (6.16% / 30.36%)
Short Range (<20Kb): 3,184  (4.21% / 20.75%)
Long Range (>20Kb): 1,474  (1.95% / 9.61%)