Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g hg19 -z /Data/DataBases/hg19_Canonic/hg19.fa -p /Data/DataBases/hg19_Canonic/hg19.chrom.sizes -s DpnII -y /Data/DataBases/hg19_Canonic/hg19_DpnII_RS.txt -d /Data/NGS_Data/20211027_Maria_NGS_data_run139/Result/hg19/scK562_6 Sequenced Read Pairs: 67,349 Normal Paired: 18,465 (27.42%) Chimeric Paired: 5,259 (7.81%) Chimeric Ambiguous: 17,868 (26.53%) Unmapped: 25,757 (38.24%) Ligation Motif Present: 30,948 (45.95%) Alignable (Normal+Chimeric Paired): 23,724 (35.23%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-11-10T19:57:51,427] [Globals.java:138] [main] Development mode is enabled Unique Reads: 17,460 (25.92%) PCR Duplicates: 6,250 (9.28%) Optical Duplicates: 14 (0.02%) Library Complexity Estimate: 36,663 Intra-fragment Reads: 572 (0.85% / 3.28%) Below MAPQ Threshold: 8,299 (12.32% / 47.53%) Hi-C Contacts: 8,589 (12.75% / 49.19%) Ligation Motif Present: 5,254 (7.80% / 30.09%) 3' Bias (Long Range): 57% - 43% Pair Type %(L-I-O-R): 25% - 26% - 25% - 24% Inter-chromosomal: 2,890 (4.29% / 16.55%) Intra-chromosomal: 5,699 (8.46% / 32.64%) Short Range (<20Kb): 3,531 (5.24% / 20.22%) Long Range (>20Kb): 2,168 (3.22% / 12.42%)