Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Kov1_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  79,140
 Normal Paired: 26,496 (33.48%)
 Chimeric Paired: 1,232 (1.56%)
 Chimeric Ambiguous: 792 (1.00%)
 Unmapped: 50,620 (63.96%)
 Ligation Motif Present: 1,244 (1.57%)
Alignable (Normal+Chimeric Paired): 27,728 (35.04%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:30:35,361]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 21,671 (27.38%)
PCR Duplicates: 5,744 (7.26%)
Optical Duplicates: 313 (0.40%)
Library Complexity Estimate: 55,924
Intra-fragment Reads: 5,673 (7.17% / 26.18%)
Below MAPQ Threshold: 2,715 (3.43% / 12.53%)
Hi-C Contacts: 13,283 (16.78% / 61.29%)
 Ligation Motif Present: 450  (0.57% / 2.08%)
 3' Bias (Long Range): 42% - 58%
 Pair Type intra chrom %(L-I-O-R): 1% - 96% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 21% - 25% - 20% - 34%
 DE: 92%
 Cis/all (FF and RR orient): 60.8%
Inter-chromosomal: 394  (0.50% / 1.82%)
Intra-chromosomal: 12,889  (16.29% / 59.48%)
Short Range (<20,000bp): 12,425  (15.70% / 57.33%)
Long Range (>20,000bp): 464  (0.59% / 2.14%)