Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Kov2_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  114,472
 Normal Paired: 9,737 (8.51%)
 Chimeric Paired: 534 (0.47%)
 Chimeric Ambiguous: 657 (0.57%)
 Unmapped: 103,544 (90.45%)
 Ligation Motif Present: 895 (0.78%)
Alignable (Normal+Chimeric Paired): 10,271 (8.97%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:31:14,448]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 7,533 (6.58%)
PCR Duplicates: 2,662 (2.33%)
Optical Duplicates: 76 (0.07%)
Library Complexity Estimate: 15,951
Intra-fragment Reads: 4,098 (3.58% / 54.40%)
Below MAPQ Threshold: 1,144 (1.00% / 15.19%)
Hi-C Contacts: 2,291 (2.00% / 30.41%)
 Ligation Motif Present: 11  (0.01% / 0.15%)
 3' Bias (Long Range): 67% - 33%
 Pair Type intra chrom %(L-I-O-R): 0% - 100% - 0% - 0%
 Pair Type inter chrom %(L-I-O-R): 22% - 19% - 27% - 32%
 DE: 96%
 Cis/all (FF and RR orient): 17.0%
Inter-chromosomal: 73  (0.06% / 0.97%)
Intra-chromosomal: 2,218  (1.94% / 29.44%)
Short Range (<20,000bp): 2,211  (1.93% / 29.35%)
Long Range (>20,000bp): 7  (0.01% / 0.09%)