Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Kul_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  107,672
 Normal Paired: 60,169 (55.88%)
 Chimeric Paired: 7,707 (7.16%)
 Chimeric Ambiguous: 5,961 (5.54%)
 Unmapped: 33,835 (31.42%)
 Ligation Motif Present: 10,328 (9.59%)
Alignable (Normal+Chimeric Paired): 67,876 (63.04%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:32:01,768]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 53,588 (49.77%)
PCR Duplicates: 13,437 (12.48%)
Optical Duplicates: 851 (0.79%)
Library Complexity Estimate: 143,982
Intra-fragment Reads: 6,298 (5.85% / 11.75%)
Below MAPQ Threshold: 6,717 (6.24% / 12.53%)
Hi-C Contacts: 40,573 (37.68% / 75.71%)
 Ligation Motif Present: 5,874  (5.46% / 10.96%)
 3' Bias (Long Range): 44% - 56%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 22% - 24% - 25% - 29%
 DE: 79%
 Cis/all (FF and RR orient): 72.6%
Inter-chromosomal: 2,325  (2.16% / 4.34%)
Intra-chromosomal: 38,248  (35.52% / 71.37%)
Short Range (<20,000bp): 33,903  (31.49% / 63.27%)
Long Range (>20,000bp): 4,345  (4.04% / 8.11%)