Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 14 threads; openjdk version "17.0.12" 2024-07-16; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /storage3/nyt/Projects/Juicer-Out/2024-07-26-BGI/Embryo/Kur3_K -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 14 Sequenced Read Pairs: 73,954 Normal Paired: 1,409 (1.91%) Chimeric Paired: 12 (0.02%) Chimeric Ambiguous: 17 (0.02%) Unmapped: 72,516 (98.06%) Ligation Motif Present: 196 (0.27%) Alignable (Normal+Chimeric Paired): 1,421 (1.92%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2024-08-06T15:01:52,343] [Globals.java:138] [main] Development mode is enabled Unique Reads: 1,380 (1.87%) PCR Duplicates: 0 (0.00%) Optical Duplicates: 41 (0.06%) Library Complexity Estimate: 0 Intra-fragment Reads: 220 (0.30% / 15.94%) Below MAPQ Threshold: 1,061 (1.43% / 76.88%) Hi-C Contacts: 319 (0.43% / 23.12%) Ligation Motif Present: 12 (0.02% / 0.87%) 3' Bias (Long Range): 44% - 56% Pair Type intra chrom %(L-I-O-R): 0% - 99% - 0% - 0% Pair Type inter chrom %(L-I-O-R): 39% - 9% - 30% - 22% DE: 92% Cis/all (FF and RR orient): 6.7% Inter-chromosomal: 23 (0.03% / 1.67%) Intra-chromosomal: 296 (0.40% / 21.45%) Short Range (<20,000bp): 294 (0.40% / 21.30%) Long Range (>20,000bp): 2 (0.00% / 0.14%)