Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2023-12-4-Sirius/Embryo/Lam1_K -s DpnII -y /data/nyt/Databases/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  137,976
 Normal Paired: 87,209 (63.21%)
 Chimeric Paired: 8,884 (6.44%)
 Chimeric Ambiguous: 6,195 (4.49%)
 Unmapped: 35,688 (25.87%)
 Ligation Motif Present: 11,323 (8.21%)
Alignable (Normal+Chimeric Paired): 96,093 (69.64%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-12-15T11:32:56,958]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 75,970 (55.06%)
PCR Duplicates: 18,831 (13.65%)
Optical Duplicates: 1,292 (0.94%)
Library Complexity Estimate: 205,854
Intra-fragment Reads: 6,106 (4.43% / 8.04%)
Below MAPQ Threshold: 9,635 (6.98% / 12.68%)
Hi-C Contacts: 60,229 (43.65% / 79.28%)
 Ligation Motif Present: 6,416  (4.65% / 8.45%)
 3' Bias (Long Range): 40% - 60%
 Pair Type intra chrom %(L-I-O-R): 4% - 87% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 21% - 24% - 27% - 28%
 DE: 80%
 Cis/all (FF and RR orient): 85.1%
Inter-chromosomal: 1,806  (1.31% / 2.38%)
Intra-chromosomal: 58,423  (42.34% / 76.90%)
Short Range (<20,000bp): 52,177  (37.82% / 68.68%)
Long Range (>20,000bp): 6,246  (4.53% / 8.22%)