Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 14 threads; openjdk version "17.0.12" 2024-07-16; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /storage3/nyt/Projects/Juicer-Out/2024-07-26-BGI/Embryo/Lim1_K -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  4,992,887
 Normal Paired: 2,470,429 (49.48%)
 Chimeric Paired: 1,850,363 (37.06%)
 Chimeric Ambiguous: 300,683 (6.02%)
 Unmapped: 371,412 (7.44%)
 Ligation Motif Present: 3,177,446 (63.64%)
Alignable (Normal+Chimeric Paired): 4,320,792 (86.54%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-06T15:12:51,761]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 717,092 (14.36%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 3,603,700 (72.18%)
Library Complexity Estimate: 0
Intra-fragment Reads: 38,687 (0.77% / 5.39%)
Below MAPQ Threshold: 190,775 (3.82% / 26.60%)
Hi-C Contacts: 526,317 (10.54% / 73.40%)
 Ligation Motif Present: 304,484  (6.10% / 42.46%)
 3' Bias (Long Range): 70% - 30%
 Pair Type intra chrom %(L-I-O-R): 13% - 60% - 14% - 13%
 Pair Type inter chrom %(L-I-O-R): 26% - 24% - 25% - 25%
 DE: 43%
 Cis/all (FF and RR orient): 78.9%
Inter-chromosomal: 62,688  (1.26% / 8.74%)
Intra-chromosomal: 463,629  (9.29% / 64.65%)
Short Range (<20,000bp): 305,389  (6.12% / 42.59%)
Long Range (>20,000bp): 158,240  (3.17% / 22.07%)