Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 14 threads; openjdk version "17.0.12" 2024-07-16; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /storage3/nyt/Projects/Juicer-Out/2024-07-26-BGI/Embryo/Mar3_K -s DpnII -y /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 14                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  788,142
 Normal Paired: 29,884 (3.79%)
 Chimeric Paired: 8,115 (1.03%)
 Chimeric Ambiguous: 1,382 (0.18%)
 Unmapped: 748,761 (95.00%)
 Ligation Motif Present: 78,968 (10.02%)
Alignable (Normal+Chimeric Paired): 37,999 (4.82%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-06T15:15:08,031]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 36,907 (4.68%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,092 (0.14%)
Library Complexity Estimate: 0
Intra-fragment Reads: 6,103 (0.77% / 16.54%)
Below MAPQ Threshold: 8,086 (1.03% / 21.91%)
Hi-C Contacts: 28,821 (3.66% / 78.09%)
 Ligation Motif Present: 9,686  (1.23% / 26.24%)
 3' Bias (Long Range): 55% - 45%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 7%
 Pair Type inter chrom %(L-I-O-R): 27% - 24% - 23% - 26%
 DE: 68%
 Cis/all (FF and RR orient): 72.1%
Inter-chromosomal: 2,504  (0.32% / 6.78%)
Intra-chromosomal: 26,317  (3.34% / 71.31%)
Short Range (<20,000bp): 21,401  (2.72% / 57.99%)
Long Range (>20,000bp): 4,916  (0.62% / 13.32%)